Module 11
FASTQ
Reading quality data with SeqIO.
Quality data
SeqIO can also read FASTQ files. Each record includes the quality scores.
from Bio import SeqIO
from io import StringIO
fastq = "@seq1\nATGC\n+\nIIII"
handle = StringIO(fastq)
for record in SeqIO.parse(handle, "fastq"):
print(record.id)Your task
Read FASTQ
- Parse a FASTQ string and print the record id.